Automated Defacing Tools
MRIConvert and mcverter Revision History MRIConvert In Action Public Library Of Science Logo MRIConvert-2.1.0.dmg MRIConvert-2.1.0.dmg MRIConvert-2.1.0-amd64.tar.gz. MRIcro allows Windows and Linux computers view medical images. It is a standalone program, but includes tools to complement SPM (software that allows neuroimagers to analyse MRI, fMRI and PET images). MRIcro allows efficient viewing and exporting of brain images. Apple Metal variant (MRIcroMTL) now matches features of OpenGL version (MRIcroGL). Both macOS downloads are universal binaries (they have native Intel and Apple CPU support).
See also MBIRN page
Cite this paper is using mri_deface: A Technique for the Deidentification of Structural Brain MR Images
Note: A license file is no longer necessary to use these tools:
mri_deface v1.22 for Linux
mri_deface v1.22 for Mac OS
talairach_mixed_with_skull.gca
face.gca
Use gunzip to decompress these downloads, ie.:
The command usage is: Download game mega man 11 pc.
So as an example, to deface your T1-weighted input file, which can be a dicom or nifti, run:
MRIcroGL 12/2012 For OSX
You will need a volume viewer to view the resulting defaced file. The freesurfer package includes the 'freeview' viewer, but there are many others capable of reading dicom and nifti volumes. MRIcron is a good option (use MRIcron, not MRIcro, because you will want nifti support).
MRIcron Installation Page
Sample input before and after defacing: